3D structure

PDB id
5O5J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.45 Å

Loop

Sequence
CGC*GG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5O5J_027 not in the Motif Atlas
Homologous match to IL_4LFB_024
Geometric discrepancy: 0.1835
The information below is about IL_4LFB_024
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

5O5J|1|A|C|574
5O5J|1|A|G|575
5O5J|1|A|C|576
*
5O5J|1|A|G|624
5O5J|1|A|G|625

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain Q
30S ribosomal protein S17

Coloring options:


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