IL_5O5J_029
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UGAAAAC*GCGUG
- Length
- 12 nucleotides
- Bulged bases
- 5O5J|1|A|U|612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O5J_029 not in the Motif Atlas
- Geometric match to IL_8C3A_433
- Geometric discrepancy: 0.2887
- The information below is about IL_8C3A_433
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83023.1
- Basepair signature
- cWW-R-L-R-L-R-L-L-L-L
- Number of instances in this motif group
- 1
Unit IDs
5O5J|1|A|U|585
5O5J|1|A|G|586
5O5J|1|A|A|587
5O5J|1|A|A|588
5O5J|1|A|A|589
5O5J|1|A|A|590
5O5J|1|A|C|591
*
5O5J|1|A|G|609
5O5J|1|A|C|610
5O5J|1|A|G|611
5O5J|1|A|U|612
5O5J|1|A|G|613
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain H
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S16
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