IL_5O5J_054

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGAUG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_054 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.3343

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5O5J|1|A|C|1240
5O5J|1|A|G|1241
5O5J|1|A|A|1242
5O5J|1|A|U|1243
5O5J|1|A|G|1244
*
5O5J|1|A|U|1253
5O5J|1|A|G|1254
5O5J|1|A|G|1255
5O5J|1|A|A|1256
5O5J|1|A|G|1257

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S19