IL_5O6U_001

3D structure

PDB id

5O6U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cascade-I-Fv R-loop complex from Shewanella putrefaciens

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAAACCUAU*ATAGGTTTG

Length

18 nucleotides

Bulged bases

5O6U|1|A|C|14, 5O6U|1|I|DG|9

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O6U|1|A|C|10
5O6U|1|A|A|11
5O6U|1|A|A|12
5O6U|1|A|A|13
5O6U|1|A|C|14
5O6U|1|A|C|15
5O6U|1|A|U|16
5O6U|1|A|A|17
5O6U|1|A|U|18
*
5O6U|1|I|DA|5
5O6U|1|I|DT|6
5O6U|1|I|DA|7
5O6U|1|I|DG|8
5O6U|1|I|DG|9
5O6U|1|I|DT|10
5O6U|1|I|DT|11
5O6U|1|I|DT|12
5O6U|1|I|DG|13

Current chains

Chain A

crRNA

Chain I

target DNA

Nearby chains

Chain C

Uncharacterized protein

Chain D

Uncharacterized protein

Chain E

Uncharacterized protein

Chain F

Uncharacterized protein