IL_5O9Z_016

3D structure

PDB id

5O9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGUAUCUGUU*AUGUCAUACUU

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O9Z|1|2|A|35
5O9Z|1|2|G|36
5O9Z|1|2|U|37
5O9Z|1|2|A|38
5O9Z|1|2|U|39
5O9Z|1|2|C|40
5O9Z|1|2|U|41
5O9Z|1|2|G|42
5O9Z|1|2|U|43
5O9Z|1|2|U|44
*
5O9Z|1|Y|A|144
5O9Z|1|Y|U|145
5O9Z|1|Y|G|146
5O9Z|1|Y|U|147
5O9Z|1|Y|C|148
5O9Z|1|Y|A|149
5O9Z|1|Y|U|150
5O9Z|1|Y|A|151
5O9Z|1|Y|C|152
5O9Z|1|Y|U|153
5O9Z|1|Y|U|154

Current chains

Chain 2

Human gene for small nuclear RNA U2 (snRNA U2)

Chain Y

MINX pre-mRNA

Nearby chains

Chain v

Splicing factor 3B subunit 1