IL_5O9Z_020
3D structure
- PDB id
- 5O9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GAUAC*GAGCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O9Z_020 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.2924
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5O9Z|1|6|G|38
5O9Z|1|6|A|39
5O9Z|1|6|U|40
5O9Z|1|6|A|41
5O9Z|1|6|C|42
*
5O9Z|1|Y|G|63
5O9Z|1|Y|A|64
5O9Z|1|Y|G|65
5O9Z|1|Y|C|66
5O9Z|1|Y|C|67
Current chains
- Chain 6
- Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA
- Chain Y
- MINX pre-mRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain G
- Pre-mRNA-processing factor 6
- Chain J
- Thioredoxin-like protein 4A
- Chain N
- Zinc finger matrin-type protein 2
- Chain Q
- WW domain-binding protein 4
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