IL_5OA3_016
3D structure
- PDB id
- 5OA3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 40S-eIF2D-re-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUGAC*GGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OA3_016 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.2104
- The information below is about IL_4WFL_001
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
5OA3|1|2|C|188
5OA3|1|2|U|189
5OA3|1|2|G|190
5OA3|1|2|A|191
5OA3|1|2|C|192
*
5OA3|1|2|G|207
5OA3|1|2|G|208
5OA3|1|2|A|209
5OA3|1|2|U|210
5OA3|1|2|G|211
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S8
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