IL_5OA3_029

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GACU*AGGCC

Length

9 nucleotides

Bulged bases

5OA3|1|2|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_029 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.2755

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5OA3|1|2|G|535
5OA3|1|2|A|536
5OA3|1|2|C|537
5OA3|1|2|U|538
*
5OA3|1|2|A|545
5OA3|1|2|G|546
5OA3|1|2|G|547
5OA3|1|2|C|548
5OA3|1|2|C|549

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S30