IL_5OA3_052

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_052 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.0964

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5OA3|1|2|C|1047
5OA3|1|2|G|1048
5OA3|1|2|A|1049
5OA3|1|2|A|1050
5OA3|1|2|G|1051
*
5OA3|1|2|C|1067
5OA3|1|2|G|1068
5OA3|1|2|U|1069
5OA3|1|2|A|1070
5OA3|1|2|G|1071

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 2D

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26