IL_5OA3_061

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_061 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.2049

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5OA3|1|2|C|1230
5OA3|1|2|C|1231
5OA3|1|2|U|1232
*
5OA3|1|2|G|1526
5OA3|1|2|C|1527
5OA3|1|2|G|1528

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain Q

40S ribosomal protein S16

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19

Chain U

40S ribosomal protein S20