IL_5OA3_085

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAUU*AGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_085 not in the Motif Atlas

Geometric match to IL_2R8S_002

Geometric discrepancy: 0.3007

The information below is about IL_2R8S_002

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5OA3|1|2|C|1717
5OA3|1|2|G|1718
5OA3|1|2|A|1719
5OA3|1|2|U|1720
5OA3|1|2|U|1721
*
5OA3|1|2|A|1813
5OA3|1|2|G|1814
5OA3|1|2|A|1815
5OA3|1|2|G|1816

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 2D

Chain X

40S ribosomal protein S23

Chain h

RIBOSOMAL PROTEIN EL41