IL_5OBM_017
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAGACAGGC*GCAUAAUG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OBM|1|1|C|435
5OBM|1|1|A|436
5OBM|1|1|G|437
5OBM|1|1|A|438
5OBM|1|1|C|439
5OBM|1|1|A|440
5OBM|1|1|G|494
5OBM|1|1|G|495
5OBM|1|1|C|496
*
5OBM|1|1|G|617
5OBM|1|1|C|618
5OBM|1|1|A|619
5OBM|1|1|U|620
5OBM|1|1|A|621
5OBM|1|1|A|622
5OBM|1|1|U|623
5OBM|1|1|G|624
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L6
- 60S ribosomal protein L6-A
- Chain M7
- 60S ribosomal protein L17-A
- Chain O2
- 60S ribosomal protein L32
- Chain O3
- 60S ribosomal protein L33-A
Coloring options: