IL_5OBM_019
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5OBM|1|1|A|519, 5OBM|1|1|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OBM_019 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.0676
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OBM|1|1|G|517
5OBM|1|1|G|518
5OBM|1|1|A|519
5OBM|1|1|U|520
5OBM|1|1|A|521
5OBM|1|1|A|522
5OBM|1|1|A|523
5OBM|1|1|U|524
5OBM|1|1|C|525
*
5OBM|1|1|G|567
5OBM|1|1|G|568
5OBM|1|1|A|569
5OBM|1|1|A|570
5OBM|1|1|U|571
5OBM|1|1|A|572
5OBM|1|1|C|573
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain L7
- 60S ribosomal protein L7-A
- Chain M4
- 60S ribosomal protein L14-A
- Chain N0
- 60S ribosomal protein L20-A
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