IL_5OBM_204

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAU*AUGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|2|C|1389
5OBM|1|2|U|1390
5OBM|1|2|A|1391
5OBM|1|2|U|1392
*
5OBM|1|2|A|1406
5OBM|1|2|U|1407
5OBM|1|2|G|1408
5OBM|1|2|G|1409
5OBM|1|2|A|1410
5OBM|1|2|A|1411
5OBM|1|2|G|1412

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C7

40S ribosomal protein S17-A

Chain S5

40S ribosomal protein S5

Chain SR

Guanine nucleotide-binding protein subunit beta-like protein