IL_5OBM_311

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AAGG*CAACUU

Length

10 nucleotides

Bulged bases

5OBM|1|5|A|2099, 5OBM|1|5|A|2100, 5OBM|1|5|C|2101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|5|A|1945
5OBM|1|5|A|1946
5OBM|1|5|G|1947
5OBM|1|5|G|1948
*
5OBM|1|5|C|2098
5OBM|1|5|A|2099
5OBM|1|5|A|2100
5OBM|1|5|C|2101
5OBM|1|5|U|2102
5OBM|1|5|U|2103

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A