IL_5OBM_361

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUAGAG*CGAUC

Length

11 nucleotides

Bulged bases

5OBM|1|5|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|5|G|3340
5OBM|1|5|U|3341
5OBM|1|5|A|3342
5OBM|1|5|G|3343
5OBM|1|5|A|3344
5OBM|1|5|G|3345
*
5OBM|1|5|C|3360
5OBM|1|5|G|3361
5OBM|1|5|A|3362
5OBM|1|5|U|3363
5OBM|1|5|C|3364

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain n2

60S ribosomal protein L22-A

Chain n4

60S ribosomal protein L24-A

Chain s8

40S ribosomal protein S8-A