IL_5OBM_372
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OBM_372 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.0868
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
5OBM|1|6|U|117
5OBM|1|6|U|118
5OBM|1|6|A|119
5OBM|1|6|U|120
5OBM|1|6|U|121
5OBM|1|6|U|122
*
5OBM|1|6|A|295
5OBM|1|6|U|296
5OBM|1|6|U|297
5OBM|1|6|C|298
5OBM|1|6|A|299
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain s4
- 40S ribosomal protein S4-A
- Chain s8
- 40S ribosomal protein S8-A
Coloring options: