IL_5OBM_457
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGUAA*UCGAAUCU
- Length
- 31 nucleotides
- Bulged bases
- 5OBM|1|8|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OBM|1|8|A|44
5OBM|1|8|C|45
5OBM|1|8|G|46
5OBM|1|8|C|47
5OBM|1|8|A|48
5OBM|1|8|G|49
5OBM|1|8|C|50
5OBM|1|8|G|51
5OBM|1|8|A|52
5OBM|1|8|A|53
5OBM|1|8|A|54
5OBM|1|8|U|55
5OBM|1|8|G|56
5OBM|1|8|C|57
5OBM|1|8|G|58
5OBM|1|8|A|59
5OBM|1|8|U|60
5OBM|1|8|A|61
5OBM|1|8|C|62
5OBM|1|8|G|63
5OBM|1|8|U|64
5OBM|1|8|A|65
5OBM|1|8|A|66
*
5OBM|1|8|U|93
5OBM|1|8|C|94
5OBM|1|8|G|95
5OBM|1|8|A|96
5OBM|1|8|A|97
5OBM|1|8|U|98
5OBM|1|8|C|99
5OBM|1|8|U|100
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain n5
- 60S ribosomal protein L25
- Chain n6
- 60S ribosomal protein L26-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o7
- 60S ribosomal protein L37-A
- Chain o9
- 60S ribosomal protein L39
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