IL_5OBM_463

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUCUAGACAG*CCGAAU

Length

16 nucleotides

Bulged bases

5OBM|1|1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|1|A|1217
5OBM|1|1|U|1218
5OBM|1|1|C|1219
5OBM|1|1|U|1220
5OBM|1|1|A|1221
5OBM|1|1|G|1222
5OBM|1|1|A|1223
5OBM|1|1|C|1224
5OBM|1|1|A|1225
5OBM|1|1|G|1226
*
5OBM|1|1|C|1283
5OBM|1|1|C|1284
5OBM|1|1|G|1285
5OBM|1|1|A|1286
5OBM|1|1|A|1287
5OBM|1|1|U|1288

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N0

60S ribosomal protein L20-A

Chain Q0

Ubiquitin-60S ribosomal protein L40