IL_5OBM_470

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU

Length

34 nucleotides

Bulged bases

5OBM|1|2|A|217, 5OBM|1|2|U|232, 5OBM|1|2|U|238, 5OBM|1|2|C|239, 5OBM|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|2|A|213
5OBM|1|2|G|214
5OBM|1|2|A|215
5OBM|1|2|U|216
5OBM|1|2|A|217
5OBM|1|2|A|218
5OBM|1|2|A|219
5OBM|1|2|A|220
5OBM|1|2|A|221
5OBM|1|2|A|222
5OBM|1|2|U|223
5OBM|1|2|C|224
5OBM|1|2|A|225
5OBM|1|2|A|226
5OBM|1|2|U|227
5OBM|1|2|G|228
5OBM|1|2|U|229
5OBM|1|2|C|230
5OBM|1|2|U|231
5OBM|1|2|U|232
5OBM|1|2|C|233
5OBM|1|2|G|234
5OBM|1|2|G|235
5OBM|1|2|A|236
5OBM|1|2|C|237
5OBM|1|2|U|238
5OBM|1|2|C|239
5OBM|1|2|U|240
5OBM|1|2|U|241
5OBM|1|2|U|242
5OBM|1|2|G|243
*
5OBM|1|2|C|250
5OBM|1|2|A|251
5OBM|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A