IL_5OBM_473

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUGGCCGGUC*GGAUUUCCAA

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|2|U|649
5OBM|1|2|U|650
5OBM|1|2|G|651
5OBM|1|2|G|652
5OBM|1|2|C|653
5OBM|1|2|C|654
5OBM|1|2|G|655
5OBM|1|2|G|656
5OBM|1|2|U|657
5OBM|1|2|C|658
*
5OBM|1|2|G|676
5OBM|1|2|G|677
5OBM|1|2|A|678
5OBM|1|2|U|679
5OBM|1|2|U|680
5OBM|1|2|U|681
5OBM|1|2|C|682
5OBM|1|2|C|683
5OBM|1|2|A|684
5OBM|1|2|A|685

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D2

40S ribosomal protein S22-A

Chain S9

40S ribosomal protein S9-A