IL_5OBM_477

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUUGUCAG*CUUGGAUUUAU

Length

19 nucleotides

Bulged bases

5OBM|1|2|U|912, 5OBM|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|2|A|892
5OBM|1|2|U|893
5OBM|1|2|U|894
5OBM|1|2|G|895
5OBM|1|2|U|896
5OBM|1|2|C|897
5OBM|1|2|A|898
5OBM|1|2|G|899
*
5OBM|1|2|C|910
5OBM|1|2|U|911
5OBM|1|2|U|912
5OBM|1|2|G|913
5OBM|1|2|G|914
5OBM|1|2|A|915
5OBM|1|2|U|916
5OBM|1|2|U|917
5OBM|1|2|U|918
5OBM|1|2|A|919
5OBM|1|2|U|920

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-B

Chain L2

60S ribosomal protein L2-A

Chain S1

40S ribosomal protein S1-A