IL_5OBM_488

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUGAAGCG*CGGGU

Length

13 nucleotides

Bulged bases

5OBM|1|5|G|2522, 5OBM|1|5|G|2585, 5OBM|1|5|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|5|A|2520
5OBM|1|5|U|2521
5OBM|1|5|G|2522
5OBM|1|5|A|2523
5OBM|1|5|A|2524
5OBM|1|5|G|2525
5OBM|1|5|C|2526
5OBM|1|5|G|2527
*
5OBM|1|5|C|2583
5OBM|1|5|G|2584
5OBM|1|5|G|2585
5OBM|1|5|G|2586
5OBM|1|5|U|2587

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain l2

60S ribosomal protein L2-A

Chain l8

60S ribosomal protein L8-A

Chain n5

60S ribosomal protein L25