IL_5OBM_501

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGCUUAG*CAGAGCG

Length

14 nucleotides

Bulged bases

5OBM|1|6|A|1712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OBM|1|6|U|1684
5OBM|1|6|G|1685
5OBM|1|6|C|1686
5OBM|1|6|U|1687
5OBM|1|6|U|1688
5OBM|1|6|A|1689
5OBM|1|6|G|1690
*
5OBM|1|6|C|1711
5OBM|1|6|A|1712
5OBM|1|6|G|1713
5OBM|1|6|A|1714
5OBM|1|6|G|1715
5OBM|1|6|C|1716
5OBM|1|6|G|1717

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s8

40S ribosomal protein S8-A