IL_5ON6_110

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

5ON6|1|1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_110 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1266

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

5ON6|1|1|U|2891
5ON6|1|1|A|2892
*
5ON6|1|1|U|2909
5ON6|1|1|A|2910
5ON6|1|1|A|2911
5ON6|1|1|G|2912

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain k

60S ribosomal protein L3

Chain q

60S ribosomal protein L9-A