IL_5ON6_173
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUACA*UUAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ON6_173 not in the Motif Atlas
- Geometric match to IL_5J7L_338
- Geometric discrepancy: 0.3549
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5ON6|1|6|G|516
5ON6|1|6|U|517
5ON6|1|6|A|518
5ON6|1|6|C|519
5ON6|1|6|A|520
*
5ON6|1|6|U|532
5ON6|1|6|U|533
5ON6|1|6|A|534
5ON6|1|6|A|535
5ON6|1|6|C|536
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain s9
- 40S ribosomal protein S9-A
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