IL_5ON6_468
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAU*GAAUUCCGUGAA
- Length
- 17 nucleotides
- Bulged bases
- 5ON6|1|AT|A|79, 5ON6|1|AT|A|80, 5ON6|1|AT|U|81, 5ON6|1|AT|C|84, 5ON6|1|AT|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ON6_468 not in the Motif Atlas
- Geometric match to IL_5TBW_147
- Geometric discrepancy: 0.2388
- The information below is about IL_5TBW_147
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_39287.1
- Basepair signature
- cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
5ON6|1|AT|U|69
5ON6|1|AT|G|70
5ON6|1|AT|A|71
5ON6|1|AT|A|72
5ON6|1|AT|U|73
*
5ON6|1|AT|G|78
5ON6|1|AT|A|79
5ON6|1|AT|A|80
5ON6|1|AT|U|81
5ON6|1|AT|U|82
5ON6|1|AT|C|83
5ON6|1|AT|C|84
5ON6|1|AT|G|85
5ON6|1|AT|U|86
5ON6|1|AT|G|87
5ON6|1|AT|A|88
5ON6|1|AT|A|89
Current chains
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- 60S ribosomal protein L26-A
- Chain AI
- 60S ribosomal protein L35-A
- Chain AK
- 60S ribosomal protein L37-A
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- 60S ribosomal protein L26-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DL
- 60S ribosomal protein L37-A
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