IL_5OOL_007

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_007 not in the Motif Atlas

Homologous match to IL_4WF9_020

Geometric discrepancy: 0.0814

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

5OOL|1|A|C|1904
5OOL|1|A|C|1905
5OOL|1|A|G|1906
*
5OOL|1|A|C|2016
5OOL|1|A|U|2017
5OOL|1|A|G|2018

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial