IL_5OOL_009

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_009 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.1294

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5OOL|1|A|G|1913
5OOL|1|A|A|1914
5OOL|1|A|C|1915
*
5OOL|1|A|G|2004
5OOL|1|A|C|2005
5OOL|1|A|C|2006

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial