IL_5OOL_012

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_012 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1663

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5OOL|1|A|C|1948
5OOL|1|A|G|1949
5OOL|1|A|U|1950
5OOL|1|A|C|1951
*
5OOL|1|A|G|1966
5OOL|1|A|U|1967
5OOL|1|A|G|1968

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial