IL_5OOL_028

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

5OOL|1|A|A|2644

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_028 not in the Motif Atlas

Homologous match to IL_7RQB_069

Geometric discrepancy: 0.073

The information below is about IL_7RQB_069

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5OOL|1|A|C|2490
5OOL|1|A|C|2491
*
5OOL|1|A|G|2643
5OOL|1|A|A|2644
5OOL|1|A|G|2645

Current chains

Chain A

16S ribosomal RNA

Nearby chains