IL_5OOL_031

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

5OOL|1|A|U|2628, 5OOL|1|A|A|2629

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_031 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2208

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5OOL|1|A|G|2596
5OOL|1|A|C|2597
*
5OOL|1|A|G|2627
5OOL|1|A|U|2628
5OOL|1|A|A|2629
5OOL|1|A|U|2630

Current chains

Chain A

16S ribosomal RNA

Nearby chains