IL_5OOL_034

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5OOL|1|A|C|2718, 5OOL|1|A|U|3100, 5OOL|1|A|A|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_034 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1416

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

5OOL|1|A|A|2717
5OOL|1|A|C|2718
5OOL|1|A|G|2719
*
5OOL|1|A|C|3099
5OOL|1|A|U|3100
5OOL|1|A|A|3101
5OOL|1|A|U|3102

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial