IL_5OOL_047

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

5OOL|1|A|G|3063, 5OOL|1|A|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_047 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.126

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5OOL|1|A|A|2997
5OOL|1|A|U|2998
5OOL|1|A|C|2999
*
5OOL|1|A|G|3061
5OOL|1|A|U|3062
5OOL|1|A|G|3063
5OOL|1|A|A|3064
5OOL|1|A|U|3065

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial