3D structure

PDB id
5OOL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
AUCUACAAUCAACCAAC*GUCAUU
Length
23 nucleotides
Bulged bases
5OOL|1|A|C|2393, 5OOL|1|A|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5OOL|1|A|A|2384
5OOL|1|A|U|2385
5OOL|1|A|C|2386
5OOL|1|A|U|2387
5OOL|1|A|A|2388
5OOL|1|A|C|2389
5OOL|1|A|A|2390
5OOL|1|A|A|2391
5OOL|1|A|U|2392
5OOL|1|A|C|2393
5OOL|1|A|A|2394
5OOL|1|A|A|2395
5OOL|1|A|C|2396
5OOL|1|A|C|2397
5OOL|1|A|A|2398
5OOL|1|A|A|2399
5OOL|1|A|C|2400
*
5OOL|1|A|G|2403
5OOL|1|A|U|2404
5OOL|1|A|C|2405
5OOL|1|A|A|2406
5OOL|1|A|U|2407
5OOL|1|A|U|2408

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 5
39S ribosomal protein L37, mitochondrial
Chain D
39S ribosomal protein L2, mitochondrial
Chain s
39S ribosomal protein S30, mitochondrial

Coloring options:

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