IL_5OPT_006
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AAUCAC*GGAAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_006 not in the Motif Atlas
- Homologous match to IL_8C3A_398
- Geometric discrepancy: 0.3786
- The information below is about IL_8C3A_398
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34063.1
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OPT|1|E|A|64
5OPT|1|E|A|65
5OPT|1|E|U|66
5OPT|1|E|C|67
5OPT|1|E|A|68
5OPT|1|E|C|69
*
5OPT|1|E|G|79
5OPT|1|E|G|80
5OPT|1|E|A|81
5OPT|1|E|A|82
5OPT|1|E|U|83
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain P
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
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