IL_5OPT_012

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

5OPT|1|E|U|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_012 not in the Motif Atlas

Geometric match to IL_5TBW_093

Geometric discrepancy: 0.2862

The information below is about IL_5TBW_093

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5OPT|1|E|G|192
5OPT|1|E|U|193
5OPT|1|E|U|194
*
5OPT|1|E|A|231
5OPT|1|E|C|232

Current chains

Chain E

18S rRNA

Nearby chains

Chain Z

40S ribosomal protein S8

Chain h

RNA-binding protein, putative