IL_5OPT_013

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGUUCCG*CAUG

Length

12 nucleotides

Bulged bases

5OPT|1|E|U|200, 5OPT|1|E|U|227

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|C|197
5OPT|1|E|U|198
5OPT|1|E|G|199
5OPT|1|E|U|200
5OPT|1|E|U|201
5OPT|1|E|C|202
5OPT|1|E|C|203
5OPT|1|E|G|204
*
5OPT|1|E|C|225
5OPT|1|E|A|226
5OPT|1|E|U|227
5OPT|1|E|G|228

Current chains

Chain E

18S rRNA

Nearby chains

Chain Z

40S ribosomal protein S8

Chain h

RNA-binding protein, putative