IL_5OPT_014

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CG*CCGUG

Length

7 nucleotides

Bulged bases

5OPT|1|E|C|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_014 not in the Motif Atlas

Geometric match to IL_5J7L_005

Geometric discrepancy: 0.1377

The information below is about IL_5J7L_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5OPT|1|E|C|239
5OPT|1|E|G|240
*
5OPT|1|E|C|307
5OPT|1|E|C|308
5OPT|1|E|G|309
5OPT|1|E|U|310
5OPT|1|E|G|311

Current chains

Chain E

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S4

Chain Z

40S ribosomal protein S8