IL_5OPT_024
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGG*CGAGUAAC
- Length
- 11 nucleotides
- Bulged bases
- 5OPT|1|E|G|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_024 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.3087
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
5OPT|1|E|G|564
5OPT|1|E|G|565
5OPT|1|E|G|566
*
5OPT|1|E|C|590
5OPT|1|E|G|591
5OPT|1|E|A|592
5OPT|1|E|G|593
5OPT|1|E|U|594
5OPT|1|E|A|595
5OPT|1|E|A|596
5OPT|1|E|C|597
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain b
- 40S ribosomal protein S9, putative
- Chain c
- 40S ribosomal protein S30
Coloring options: