IL_5OPT_027

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5OPT|1|E|U|612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_027 not in the Motif Atlas

Geometric match to IL_6MWN_006

Geometric discrepancy: 0.3445

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5OPT|1|E|G|611
5OPT|1|E|U|612
5OPT|1|E|C|613
*
5OPT|1|E|G|640
5OPT|1|E|C|641

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative

Chain c

40S ribosomal protein S30

Chain m

40S ribosomal protein S3, putative