IL_5OPT_034

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUGGUUUAGU*GACCCAU

Length

18 nucleotides

Bulged bases

5OPT|1|E|U|716

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|A|710
5OPT|1|E|A|711
5OPT|1|E|U|712
5OPT|1|E|G|713
5OPT|1|E|G|714
5OPT|1|E|U|715
5OPT|1|E|U|716
5OPT|1|E|U|717
5OPT|1|E|A|718
5OPT|1|E|G|719
5OPT|1|E|U|720
*
5OPT|1|E|G|741
5OPT|1|E|A|742
5OPT|1|E|C|743
5OPT|1|E|C|744
5OPT|1|E|C|745
5OPT|1|E|A|746
5OPT|1|E|U|747

Current chains

Chain E

18S rRNA

Nearby chains

Chain f

40S ribosomal protein SA

Chain g

40S ribosomal protein S21, putative