IL_5OPT_035

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCCCAU*GGAUUGGUG

Length

15 nucleotides

Bulged bases

5OPT|1|E|U|737, 5OPT|1|E|U|740

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|U|720
5OPT|1|E|C|721
5OPT|1|E|C|722
5OPT|1|E|C|723
5OPT|1|E|A|724
5OPT|1|E|U|725
*
5OPT|1|E|G|733
5OPT|1|E|G|734
5OPT|1|E|A|735
5OPT|1|E|U|736
5OPT|1|E|U|737
5OPT|1|E|G|738
5OPT|1|E|G|739
5OPT|1|E|U|740
5OPT|1|E|G|741

Current chains

Chain E

18S rRNA

Nearby chains

Chain f

40S ribosomal protein SA

Chain g

40S ribosomal protein S21, putative