IL_5OPT_036

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGUGGUAC*GCGC

Length

13 nucleotides

Bulged bases

5OPT|1|E|G|794, 5OPT|1|E|G|797, 5OPT|1|E|U|798

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|G|792
5OPT|1|E|A|793
5OPT|1|E|G|794
5OPT|1|E|U|795
5OPT|1|E|G|796
5OPT|1|E|G|797
5OPT|1|E|U|798
5OPT|1|E|A|799
5OPT|1|E|C|800
*
5OPT|1|E|G|836
5OPT|1|E|C|837
5OPT|1|E|G|838
5OPT|1|E|C|839

Current chains

Chain E

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S4

Chain P

40S ribosomal protein S6

Chain h

RNA-binding protein, putative