IL_5OPT_049

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_049 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.1163

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5OPT|1|E|G|1320
5OPT|1|E|G|1321
5OPT|1|E|G|1322
5OPT|1|E|A|1323
5OPT|1|E|U|1324
5OPT|1|E|C|1325
*
5OPT|1|E|G|1349
5OPT|1|E|U|1350
5OPT|1|E|C|1351

Current chains

Chain E

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S26

Chain V

40S ribosomal protein S14, putative