IL_5OPT_056

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

5OPT|1|E|G|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_056 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.2491

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5OPT|1|E|G|1617
5OPT|1|E|G|1618
5OPT|1|E|A|1619
*
5OPT|1|E|U|2161
5OPT|1|E|U|2162

Current chains

Chain E

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S26