IL_5OPT_059

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_059 not in the Motif Atlas

Geometric match to IL_5XTM_004

Geometric discrepancy: 0.3828

The information below is about IL_5XTM_004

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_46637.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

5OPT|1|E|C|1688
5OPT|1|E|A|1689
5OPT|1|E|G|1690
*
5OPT|1|E|U|1730
5OPT|1|E|G|1731

Current chains

Chain E

18S rRNA

Nearby chains

Chain i

40S ribosomal protein S12

Chain n

40S ribosomal protein S10, putative