IL_5OPT_060

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUG*UC

Length

5 nucleotides

Bulged bases

5OPT|1|E|U|1737

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_060 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.44

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5OPT|1|E|G|1736
5OPT|1|E|U|1737
5OPT|1|E|G|1738
*
5OPT|1|E|U|1955
5OPT|1|E|C|1956

Current chains

Chain E

18S rRNA

Nearby chains

Chain c

40S ribosomal protein S30

Chain n

40S ribosomal protein S10, putative

Chain q

Ribosomal protein S29, putative