IL_5OPT_068

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGACCG*CGCGCAAC

Length

15 nucleotides

Bulged bases

5OPT|1|E|C|2102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_068 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.3142

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5OPT|1|E|G|2073
5OPT|1|E|G|2074
5OPT|1|E|G|2075
5OPT|1|E|A|2076
5OPT|1|E|C|2077
5OPT|1|E|C|2078
5OPT|1|E|G|2079
*
5OPT|1|E|C|2098
5OPT|1|E|G|2099
5OPT|1|E|C|2100
5OPT|1|E|G|2101
5OPT|1|E|C|2102
5OPT|1|E|A|2103
5OPT|1|E|A|2104
5OPT|1|E|C|2105

Current chains

Chain E

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S5, putative

Chain o

Ribosomal protein S19, putative

Chain u

40S ribosomal protein S18, putative