IL_5OPT_075

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_075 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.2148

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5OPT|1|E|G|2191
5OPT|1|E|A|2192
5OPT|1|E|U|2193
*
5OPT|1|E|A|2259
5OPT|1|E|A|2260
5OPT|1|E|U|2261

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative